Pathways

Pathway membership from KEGG and Reactome, value is binary, i.e. 0 or 1

Each pathway contains different genes, and the original data looks like below:

Pathway-genes relationship

In Node Color section, when you click on a specific pathway name in the dropdown list of “Pathways” feature, you will see red colors rendered in the network, indicating the genes in the selected pathway. The name of each pathway follows the format of {database name}_{pathway name}, for example, “KEGG_Endocytosis”, shown as below:

Pathway name format

For more information about each pathway, please refer to the following databases:

• KEGG Pathways
• Reactome Pathways